INDELs (small insertions and deletion with size less than 50bp) as well
as large deletions
that are within the
coding regions from the exome sequencing data. It also can be applied
to the whole genome sequencing data.
2011-10-13: SPLITREAD version 0.1 release:
- Initial release of SPLITREAD.
- This version uses mrsFAST for mapping. It predicts all
deletions and small insertions and output a bed file with support
value. It mostly uses bash scripts for processing the intermediate
files. An update with the BWA version and a better output format will
be released soon.
both indels and mismatches and
performs iterative search to increase mapping sensitivity. Specifically
designed for copy number variation and structural variation analysis.
Illumina read mapper that finds only mismatches to increase mapping
speed. Also supports bisulfite mapping.
discover large segmental
for di-base color-space reads generated with the SOLiD platform.
Structural variation calling algorithm using read pair
mapping information including suboptimal alignments.
sequence insertion discovery framework.